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New Record of a Sea Urchin Echinometra mathaei (Echinoidea: Camarodonta: Echinometridae) from Jeju Island, Korea and Its Molecular Analysis
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ABSTRACT
New Record of a Sea Urchin Echinometra mathaei (Echinoidea: Camarodonta: Echinometridae) from Jeju Island, Korea and Its Molecular Analysis
KEYWORD
taxonomy , sea urchin , Echinometridae , molecular phylogeny , cytochorome c oxidase subunit I
  • INTRODUCTION

    Genus Echinometra species generally occur throughout the tropical Pacific and also from East Africa to the Indian Ocean (Clark and Rowe, 1971). This genus contains seven extant species, including E. insularis, E. lucunter, E. l. polypora, E. mathaei, E. m. oblonga, E. vanbrunti, and E. viridis (Kroh and Mooi, 2012). Among them, E. mathaei is widely distributed over the Indo-Pacific region from the Red Sea to Hawaii, Australia, and southern Japan (Mortensen, 1943; Nisiyama, 1966). This species was first described by Blainville (1825) based on a single specimen from Mauritius, East Africa. He also described E. m. oblonga as a subspecies of E. mathaei without describing the type locality, and its body color was described as white or violet. Echinometra mathaei oblonga was elevated to the separate genus Mortensia by Doderlein (1906) because of the shape of gonadal spicules. But, Mortensen (1943) claimed these as shapes of E. mathaei, and gave the species a subspecies name, E. mathaei oblonga. Subsequently, Clark and Rowe (1971) and Kroh and Mooi (2012) followed the nomenclature of Mortensen (1943). Some morphological (Arakaki et al., 1998; Arakaki and Uehara, 1999) and molecular (Palumbi et al., 1997; McCartney et al., 2000; Landry et al., 2003) studies were conducted due to the obscure relationship between these species. A morphological and molecular examination and identification of Echinometra specimens collected from Munseom of Jeju Island, Korea was performed in the present study.

    MATERIALS AND METHODS

    Echinoid specimens were collected at depths of 5-10 m in Munseom, Jeju Island by SCUBA diving on November 23, 2008 and September 15, 2009. The specimens were preserved in 95% ethanol, and their important morphological characters were photographed with a digital camera (Canon G12; Canon Co., Tokyo, Japan) and stereo and light microscopy (Nikon SMZ1000, Nikon Eclipse 80i; Nikon Co., Tokyo, Japan). The specimens were morphologically identified based on the descriptions of Mortensen (1943) and Clark and Rowe (1971).

    Genomic DNA was extracted from the tubefeet of Korean echinoids using the DNeasy Blood and Tissue kit (Qiagen, Hilden, Germany) for the molecular analysis. The mitochondrial cytochrome c oxidase subunit 1 (COI) gene fragment

    [Table 1.] List of taxa and GenBank accession numbers of mitochondrial cytochrome c oxidase subunit 1 (COI) sequences examined in this study

    label

    List of taxa and GenBank accession numbers of mitochondrial cytochrome c oxidase subunit 1 (COI) sequences examined in this study

    was amplified using ECO1a and ECO1b, as suggested by Knott and Wray (2000). The COI gene fragment corresponding to the interval between sites 5921 to 6861 of the Strongylocentrotus purpuratus mitochondrial genome (NCBI ID: NC001453) was obtained for each specimen.

    PCR analyses were conducted according to Lee and Shin (2011). DNA fragments were sequenced on an ABI 3730XL Sequencer (Applied Biosystems Inc., Foster City, CA, USA) using the ABI Prism Bigdye Terminator v3.1 (Applied Biosystems). The mitochondrial COI gene was sequenced, and the sequence data of five species that were not distributed in Korea were obtained from GenBank (Table 1). COI sequences were aligned using CLUSTAL X (Thompson et al., 1997), and genetic distances were calculated according to the Kimura 2-parameter model using MEGA5 (Tamura et al., 2011). The best-fit evolutionary model was identified using the Akaike Information Criterion (AIC) in jMODELTEST (Posada, 2008), and the result was GTR+G(α=0.238). A phylogenetic tree was drawn with neighbor joining (NJ), maximum likelihood (ML), and Bayesian inference (BI) methods. The NJ tree was inferred from the Kimura 2-parameter genetic distance and bootstrapped 1,000 times using MEGA5. The ML tree was analyzed with PHYML v.3.0 (Guindon and Gascuel, 2003) and 1,000 bootstrap replications. The BI analysis was conducted with the same model and analyzed by MrBayes 3.1.2 with 2×106 trees, sampling every 1,000th tree, and credibility values of the nodes were calculated with the 50% majority rule tree after discarding the first 500 trees (Ronquist and Huelsenbeck, 2003).

    RESULTS

      >  Systematic notes

    Class Echinoidea Leske, 1778

    Order Camarodonta Jackson, 1912

    Infraorder Echinidea Kroh and Smith, 2010

    Family Echinometridae Gray, 1855

    Key to the genera of family Echinometridae in Korea

    1. Test oval shaped, with usually four pore-pairs to an arc ????????????????????????????????????????????????????????????????Echinometra

    Test nearly circular shaped, with usually eight pore-pairs to an arc ???????????????????????????????????????????????????Heliocidaris

    1*Genus Echinometra Gray, 1825

    Echinometra Gray, 1825: 426; Blainville, 1830: 206; L Agassiz and Desor, 1846: 372; A Agassiz, 1872-1874: 282; Doderlein, 1906: 233; HL Clark, 1912: 370; Mortensen, 1943: 352; Nisiyama, 1966: 267; Kroh and Mooi, 2012: 179659.

    Ellipsechinus Lutken, 1864: 165.

    Mortensenia Doderlein, 1906: 233.

    Test more or less oval shaped, stout, longitudinal axis through interambulacral III to ambulacral 1. Ambulacrals with four pore-pairs per an arc. Apical system with all exserted ocular plates. Primary spines rather long, strong, pointed, Globiferous pedicellariae with one lateral tooth, tubefeet with C-shaped spicules.

    Type species: Echinus lucunter Linnaeus, 1758.

    2*Echinometra mathaei (Blainville, 1825) (Fig. 1)

    Echinus mathai Blainville, 1825: 94; 1830: 206.

    Echinometra mathaei Blainville, 1834: 225; Mortensen, 1903: 128; A Agassiz and HL Clark, 1907: 241; HL Clark, 1908: 303; 1912: 372; Koehler, 1914: 250; Mortensen, 1940: 103; 1943, 381; Nisiyama, 1966: 271; AM Clark and Rowe, 1971: 157; Arakaki et al., 1998: 159; Arakaki and Uehara, 1999: 551; Kroh and Mooi, 2012: 213383.

    Echinometra megastoma M’Clelland, 1840: 181.

    Echinometra heteropora L Agassiz and Desor, 1846: 372.

    Echinometra microtuberculata A Agassiz, 1863: 22.

    Echinometra picta A Agassiz and HL Clark, 1907: 241; HL Clark, 1912: 373.

    Ellipsechinus decryi Lambert, 1933: 47.

    Material examined. 1 specimen, Munseom, Jeju Island, 23 Nov 2008, at 5 m depth by SCUBA diving; 1 specimen, 15 May 2009, at 10 m depth by SCUBA diving.

    Description. Test of small size, strong, hemispherical, oval shaped; ventral side flat, scarcely sunken towards peristome. Ambulacral with four pore-pairs, rarely five to one oblique and rather irregularly curved pore-arcs (Fig. 1E). One of tubercles in pore-zone enlarged and forms a fairly conspicuous vertical. In interambulacral, larger secondary tubercles usually form a distinct vertical series admedially and adradially to primary series. These secondaries vary in size, from almost as large as smaller than primaries. Apical system with all ocular plates exserted (Fig. 1D). Genital plates covered with some small spines, and genital pores developed (Fig. 1D).

    [Table 2.] Interspecific pairwise distance values (p) between six species of genus Echinometra and outgroups of Heliocidaris crassispina, Mesocentrotus nudus, and Strongylocentrotus purpuratus based on partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene

    label

    Interspecific pairwise distance values (p) between six species of genus Echinometra and outgroups of Heliocidaris crassispina, Mesocentrotus nudus, and Strongylocentrotus purpuratus based on partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene

    Suranal plate indistinct, and anal opening acentric. Primary spines rather long, about as long as half test diameter, usually rather stout, tapering, and colors getting lighter at tips (Fig. 1F). Secondary spines rather short, with flat tips, looks like rolling pins (Fig. 1F). Globiferous pedicellariae very scarce: valve with a lateral tooth as long as two-thirds of apical tooth (Fig. 1H). Tridentate pedicellariae large: valve with curved tips (Fig. 1I). Ophiocephalous pedicellariae narrow in middle: valve with zigzag edges (Fig. 1J). Triphyllous pedicellariae small: valve width moderately as wide as basal part (Fig. 1K). Tubefeet with C-shaped spicules (Fig. 1L). Buccal plates with some small spines in peristome among a few assemblages of ophiocephalous pedicellariae.

    Size. Test diameter, 19.0, 29.0 mm; test height, 9.0, 13.0mm (44.8, 47.4% of test diameter); apical system, 3.8, 6.1 mm (18.0, 19.0% of test diameter); peristome, 9.8, 15.0mm(51.6, 51.7% of test diameter); number of interambulacral plates, 9, 13; number of ambulacral plates, 11, 26.

    Distribution. Korea (Jeju Island), Japan (Okinawa), China, Philippines, Hawaii, Solomon Islands, northern Australia, Indo-West Pacific, East Africa (Kenya, Mauritius, Mozam-

    bique, Tanzania), Red Sea.

      >  Molecular analysis

    The sequences of our Korean E. mathaei specimens were compared with GenBank data of six Echinometra species such as E. mathaei, E. m. oblonga, E. insularis, E. lucunter, E. vanbrunti, and E. viridis of the family Echinometridae, using Heliocidaris crassispina, Hemicentrotus pulcherrimus, and Strongylocentrotus pallidus of the family Strongylocentrotidae within the same infraorder as outgroups taken from GenBank. After sequence alignment, a portion of the COI gene corresponding to bases 6471-6854 of the S. purpuratus complete mitochondrial genome was obtained. Our COI dataset comprised 383 bp of the COI gene.

    Genetic pairwise distance (p) values were estimated by the Kimura 2-parameter model and were compared (Table 2). As a result, no differences were found between the two Korean specimens. The average value of Korean E. mathaei-GenBank E. mathaei was “0.00”. This value was much lower than the distance values of E. mathaei-E. m. oblonga (p=0.03), E. mathaei-E. insularis (p=0.04), E. mathaei-E. lucunter (p= 0.12), E. mathaei-E. vanbrunti (p=0.12) and E. mathaei-E. viridis (p=0.12).

    Phylogenetic trees were estimated by BI, NJ and ML methods. Each species of Echinometra established an independent monophyletic clade (Fig. 2). The sequences of Korean E. mathaei formed a distinct monophyletic group with the GenBank E. mathaei, and these sequences were clearly separated from E. insularis and E. m. oblonga. Genus Echinometra was divided into two groups; Group I=(E. m. oblonga (E. mathaei, E. insularis)) and Group II=(E. vanbrubti (E. lucunter, E. viridis)).

    Korean name: 1*만두성게속(신칭), 2*만두성게(신칭)

    DISCUSSION

    Our specimens were identified as Echinometra mathaei, which is newly recorded in Korea. To date, 13 echinoid species including this species have been reported from Jeju Island, and 32 echinoid species have been recorded in Korea (Shin and Rho, 1996; Shin, 1998; Shin et al., 2006; Lee and Shin, 2011). E. mathaei is represented by great diversity in form of test and spines, as well as in color and form (Mortensen, 1943; Arakaki et al., 1998). Our specimens coincided with these previous morphological descriptions of E. mathaei, but the tubefeet spicules differed slightly from those of Japanese specimens. E. mathaei has C-shaped and triradiate forms of tubefeet spicules (Arakaki et al., 1998; Arakaki and Uehara, 1999), whereas the tubefeet of our specimens contained only C-shaped spicules, but Japanese specimens contained only one C-shaped type or sometimes two tubefeet types (Arakaki et al., 1998). Because of these morphological variations, some studies have investigated the speciation and interspecific relationships of Echinometra species using the mitochondrial COI gene (Palumbi et al., 1997; McCartney et al., 2000; Landry et al., 2003).

    The results of the phylogenetic tree (Fig. 2) indicated that the Korean Echinometra specimens clearly established one independent phylogenetic group with those taken from Gen- Bank, and showed no differences in base sequences. These data distinctly support that the Korean Echinometra specimens are E. mathaei. The finding that the genus Echinometra was divided into groups I and II corresponded with the results of previous studies (McCartney et al., 2000; Landry et al., 2003). But, the relationship of group I in the present study was contrary to the results of Landry et al. (2003). The results obtained from 1164 bp of the COI gene dataset analysis using NJ method by Landry et al. (2003) were the same as (E. vanbrunti (E. insularis (E. mathaei, E. m. oblonga))). The results obtained from 930 bp of the COI gene dataset analysis using the NJ method agreed with those of Landry et al. (2003), but the results obtained by the BI and ML methods were the same as those of group I in Fig. 2. Because the results varied according to the analytical methods employed, additional analyses about these relationships are required using other genes.

참고문헌
  • 1. Agassiz A 1863 List of the echinoderms sent to different institutions in exchange for other specimens, with annotations. [Bulletin of the Museum of Comparative Zoology at Harvard College] Vol.1 P.17-28 google
  • 2. Agassiz A 1872-1874 Revision of the Echini. [Memoirs of the Museum of Comparative Zoology at Harvard College] Vol.3 P.1-762 google
  • 3. Agassiz A, Clark HL 1907 Preliminary report on the Echini collected, in 1902, among the Hawaiian Islands, by the U.S. Fish Commission steamer “Albatross”, in charge of commander Chauncey Thomas, U.S.N., commanding. [Bulletin of the Museum of Comparative Zoology at Harvard College] Vol.50 P.231-259 google
  • 4. Agassiz L, Desor E 1846 Catalogue raisonne des familles des genres et des especes de la classe de echinodermes. [Annals Science Naturelles, Zoologie] Vol.3 P.325-374 google
  • 5. Arakaki Y, Uehara T 1999 Morphological comparison of black Echinometra individuals among those in the Indo-West Pacific. [Zoological Science] Vol.16 P.551-558 google
  • 6. Arakaki Y, Uehara T, Fagoonee I 1998 Comparative studies of the genus Echinometra from Okinawa and Mauritius. [Zoological Science] Vol.15 P.159-168 google
  • 7. Blainville HM 1825 Dictionnaire des sciences naturelles, dans lequel un traite methodiquement des differences tetres de la nature, P.59-102 google
  • 8. Blainville HM 1830 Zoophyte. In: Dictionnaire des Sciences Naturelles. Vol. 60 (Ed., Cuvier F). P.1-546 google
  • 9. Blainville HM 1834 Manuel d’Actinologie ou de Zoophytologie. P.1-644 google
  • 10. Clark AM, Rowe FWE 1971 Monograph of shallow-water Indo-West Pacific echinoderms. [The British Museum Publication (Natural History)] Vol.690 P.1-238 google
  • 11. Clark HL 1908 Some Japanese and East Indian echinoderms. [Bulletin of the Museum of Comparative Zoology at Harvard College] Vol.52 P.279-311 google
  • 12. Clark HL 1912 Hawaiian and other Pacific echini: the Pedinidae, Phymosomatidae, Stomopneustidae, Echinidae, Temnopleuridae, Strongylocentrotidae, and Echinometridae. [Memoirs of the Museum of Comparative Zoology at Harvard College] Vol.34 P.1-383 google
  • 13. Doderlein L 1906 Die Echinoiden der deutschen Tiefsee-Expedition. [Wissenschaftliche Ergebnisse der Deutschen Tiefsee Expedition auf dem Dampfer “Valdivia” 1898-1899] Vol.5 P.63-350 google
  • 14. Gray JE 1825 An attempt to divide the Echinida or sea-eggs into natural families. [Annals of Philosophy] Vol.26 P.423-431 google
  • 15. Guindon S, Gascuel O 2003 A simple, fast and accurate algorithm to estimate large phylogenies by maximum-likelihood. [Systematic Biology] Vol.52 P.696-704 google
  • 16. Jacobs HT, Elliott DJ, Math VB, Farquharson A 1988 Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. [Journal of Molecular Biology] Vol.202 P.185-217 google
  • 17. Knott KE, Wray GA 2000 Controversy and consensus in asteroid systematics: new insights to ordinal and familial relationships. [American Zoologist] Vol.40 P.382-392 google
  • 18. Koehler R 1914 Echinoderma I. Asteroidea, Ophiuroidea et Echinoidea. In: Beitrage zur Kenntnis der Meeresfauna Westafrikas. Vol. 1 (Ed., Michaelsen W). P.127-303 google
  • 19. Kroh A, Mooi R 2012 World Echinoidea database [Internet]. google
  • 20. Lambert J 1933 Echinides de Madagascar communiques par M. H. Besairie. [Annales Geologiques du Service des Mines] Vol.3 P.7-49 google
  • 21. Landry C, Geyer LB, Arakaki Y, Uehara T, Palumbi SR 2003 Recent speciation in the Indo-West Pacific: rapid evolution of gamete recognition and sperm morphology in cryptic species of sea urchin. [Proceedings of the Royal Society of London Series B-Biological Sciences] Vol.270 P.1839-1847 google
  • 22. Lee T, Shin S 2011 A new record of sea urchin (Echinoidea: Camarodonta: Strongylocentrotidae) based on morphological and molecular analysis in Korea. [Korean Journal of Systematic Zoology] Vol.27 P.213-219 google
  • 23. Lutken CF 1864 Bidrag til Kundskab om Echiniderne. [Videnskabelige Meddelelser fra den naturhistoriske Forening i Kjobenhavn] Vol.1863 P.69-207 google
  • 24. McCartney MA, Keller G, Lessios HA 2000 Dispersal barriers in tropical oceans and speciation in Atlantic and eastern Pacific sea urchins of the genus Echinometra. [Molecular Ecology] Vol.9 P.1391-1400 google
  • 25. M’Clelland J 1840 On Cyrtoma, a new genus of fossil Echinida. [The Calcutta Journal of Natural History] Vol.1 P.155-187 google
  • 26. Mortensen T 1903 The Danish Ingolf expedition 1895-1896. Vol. 4, No. 2. Echinoidea, Part. 1. P.1-200 google
  • 27. Mortensen T 1940 Echinoderms from the Iranian Gulf. Asteroidea, Ophiuroidea, and Echinoidea. In: Danish Scientific Investigations in Iran, part 2 (Eds., Jessen K, Sparck R) P.55-112 google
  • 28. Mortensen T 1943 A monograph of Echinoida. Vol. III, 3. Camarodonta. II. Echinoidae, Strongylocentrotidae, Parasaleniidae, Echinometridae. P.1-446 google
  • 29. Nisiyama S 1966 The echinoid fauna from Japan and adjacent regions, Part 1. [Palaeontological Society of Japan, Special Papers] Vol.11 P.1-277 google
  • 30. Palumbi SR, Grabowsky G, Duda T, Geyer L, Tachino N 1997 Speciation and population genetic structure in tropical Pacific sea urchins. [Evolution] Vol.51 P.1506-1517 google
  • 31. Posada D 2008 jModeltest: phylogenetic model averaging. [Molecular Biology and Evolution] Vol.25 P.1253-1256 google
  • 32. Ronquist F, Huelsenbeck JP 2003 Mrbayes: Bayesian phylogenetic inference under mixed models. [Bioinformatics] Vol.19 P.1572-1574 google
  • 33. Shin S 1998 Echinoderms from Geojedo Island and adjacent sea waters, Korea. [Korean Journal of Systematics Zoology] Vol.14 P.193-205 google
  • 34. Shin S, Pyo J, Kim SH 2006 A new record of sea urchin (Echinoidea: Echinothurioida) from Jeju Island, Korea. [Korean Journal of Systematics Zoology] Vol.22 P.105-108 google
  • 35. Shin S, Rho BJ 1996 Illustrated encyclopedia of fauna and flora of the Korea. Vol. 36. Echinodermata. P.1-780 google
  • 36. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S 2011 MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. [Molecular Biology and Evolution] Vol.28 P.2731-2739 google
  • 37. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG 1997 The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. [Nucleic Acids Research] Vol.25 P.4876-4882 google
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  • [ Table 1. ]  List of taxa and GenBank accession numbers of mitochondrial cytochrome c oxidase subunit 1 (COI) sequences examined in this study
    List of taxa and GenBank accession numbers of mitochondrial cytochrome c oxidase subunit 1 (COI) sequences examined in this study
  • [ Fig. 1. ]  Echinometra mathaei. A, Dorsal side; B, Ventral side; C, Lateral side; D, Apical system; E, Pore pairs; F, Primary spine on dorsal side (left) and secondary spine on ventral side (right); G, Globiferous pedicellaria; H, Heads of globiferous pedicellaria; I, Valve of tridentate pedicellaria; J, Valve of ophiocephalous pedicellaria; K, Valves of tripyllous pedicellaria; L, Spicules of tubefeet. Scale bars: A-C=1.5 cm, D, F=0.5 cm, E=1.5 mm, G, J=200 μm, H, I=100 μm, K=50 μm, L=25 μm.
    Echinometra mathaei. A, Dorsal side; B, Ventral side; C, Lateral side; D, Apical system; E, Pore pairs; F, Primary spine on dorsal side (left) and secondary spine on ventral side (right); G, Globiferous pedicellaria; H, Heads of globiferous pedicellaria; I, Valve of tridentate pedicellaria; J, Valve of ophiocephalous pedicellaria; K, Valves of tripyllous pedicellaria; L, Spicules of tubefeet. Scale bars: A-C=1.5 cm, D, F=0.5 cm, E=1.5 mm, G, J=200 μm, H, I=100 μm, K=50 μm, L=25 μm.
  • [ Table 2. ]  Interspecific pairwise distance values (p) between six species of genus Echinometra and outgroups of Heliocidaris crassispina, Mesocentrotus nudus, and Strongylocentrotus purpuratus based on partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene
    Interspecific pairwise distance values (p) between six species of genus Echinometra and outgroups of Heliocidaris crassispina, Mesocentrotus nudus, and Strongylocentrotus purpuratus based on partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene
  • [ Fig. 2. ]  Bayesian inference (BI), neighbor-joining (NJ), and maximum-likelihood (ML) trees of the Echinometra species inferred from the mitochondrial cytochrome c oxidase subunit 1 (COI) partial sequence dataset. Support values for each node are represented by Bayesian posterior probabilities, NJ and ML bootstrap values. Values <“0.70” or “70” appear as hyphens.
    Bayesian inference (BI), neighbor-joining (NJ), and maximum-likelihood (ML) trees of the Echinometra species inferred from the mitochondrial cytochrome c oxidase subunit 1 (COI) partial sequence dataset. Support values for each node are represented by Bayesian posterior probabilities, NJ and ML bootstrap values. Values <“0.70” or “70” appear as hyphens.
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